SNP
SNP: ID00425
SNP (HGVS):
c.27299 T > C
Nucleotide in reference genome:
T - (Thymine)
Nucleotide in target genome:
C - (Cytosine)
Position in the genome:
27299
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF6 : p.Ile33Thr
Gene
ORF6
Amino Acid Change:
Ile - I - isoleucine
Thr - T - threonine
Position in the gene
33
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-01
Location : South America - Brazil
Strain-ID : hCoV-19BrazilRJ-IC0102020_158-202020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- G ( GISAID_clade ) Prevalence: 6.87%
- N.10 ( pangolin_lineage ) Prevalence: 0.03%
- N.7 ( pangolin_lineage ) Prevalence: 0.03%
- N.3 ( pangolin_lineage ) Prevalence: 0.07%
- B.1.617.1 ( pangolin_lineage ) Prevalence: 0.07%
- B.1.1.33 ( pangolin_lineage ) Prevalence: 0.13%
- N.4 ( pangolin_lineage ) Prevalence: 0.10%
- N.5 ( pangolin_lineage ) Prevalence: 0.13%
- N.9 ( pangolin_lineage ) Prevalence: 0.03%