SNP
SNP: ID00828
SNP (HGVS):
c.25906 G > T
Nucleotide in reference genome:
G - (Guanine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
25906
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF3a : p.Gly172Cys
Gene
ORF3a
Amino Acid Change:
Gly - G - glycine
Cys - C - cysteine
Position in the gene
172
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-16
Location : Europe - Greece
Strain-ID : hCoV-19Greece145_347262020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- G ( GISAID_clade ) Prevalence: 6.87%
- P.1.14 ( pangolin_lineage ) Prevalence: 0.33%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- AY.20 ( pangolin_lineage ) Prevalence: 2.63%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.525 ( pangolin_lineage ) Prevalence: 0.50%