SNP
SNP: ID001785
SNP (HGVS):
c.25647 G > T
Nucleotide in reference genome:
G - (Guanine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
25647
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF3a : p.Leu85Phe
Gene
ORF3a
Amino Acid Change:
Leu - L - leucine
Phe - F - phenylalanine
Position in the gene
85
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-30
Location : Asia - India
Strain-ID : hCoV-19IndiaMH-NIV-63152020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- GV ( GISAID_clade ) Prevalence: 1.03%
- C.35 ( pangolin_lineage ) Prevalence: 0.17%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- AY.33 ( pangolin_lineage ) Prevalence: 1.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.46.6 ( pangolin_lineage ) Prevalence: 0.20%
- AY.26 ( pangolin_lineage ) Prevalence: 1.10%
- AY.2 ( pangolin_lineage ) Prevalence: 0.03%