SNP
SNP: ID00374
SNP (HGVS):
c.25471 G > T
Nucleotide in reference genome:
G - (Guanine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
25471
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF3a : p.Asp27Tyr
Gene
ORF3a
Amino Acid Change:
Asp - D - aspartic_acid
Tyr - Y - tyrosine
Position in the gene
27
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-11
Location : Europe - France
Strain-ID : hCoV-19FranceOCC-SC5302020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- GH ( GISAID_clade ) Prevalence: 3.23%
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- AY.33 ( pangolin_lineage ) Prevalence: 1.03%
- AY.26 ( pangolin_lineage ) Prevalence: 1.10%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.46.6 ( pangolin_lineage ) Prevalence: 0.20%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%