IDbSV - International Database of SARS-CoV-2 Variants

SNP

SNP: ID0022

SNP (HGVS):

c.28882 G > A

Nucleotide in reference genome:

G - (Guanine)

Nucleotide in target genome:

A - (Adenine)

Position in the genome:

28882

SARS-CoV-2 genes

Annotation

Amino Acid Mutation (HGVS):

N : p.Arg203Arg

Gene

Amino Acid Change:

Arg - R - arginine

Position in the gene

203

Position in the gene

Synonymous / Non-Synonymous:

Synonymous

Structural / Non-Structural Protein:

Structural

Predicted effect:

LOW

Download CSV file (Annotation)

FIRST KNOW APPEARANCE

Date : 2020-01-12

Location : Asia - India

Strain-ID : hCoV-19IndiaMH-NCCS-1545582020

Map:

Lineages and frequencies

variation observed in these lineages:

GR ( GISAID_clade ) Prevalence: 18.10%
O ( GISAID_clade ) Prevalence: 1.90%
GRY ( GISAID_clade ) Prevalence: 5.17%
G ( GISAID_clade ) Prevalence: 6.87%
B.1.1.1 ( pangolin_lineage ) Prevalence: 0.07%
N.4 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.13 ( pangolin_lineage ) Prevalence: 0.10%
P.1.17 ( pangolin_lineage ) Prevalence: 0.30%
B.1.1.218 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.133 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.163 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.324 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.222 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.39 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.63 ( pangolin_lineage ) Prevalence: 0.13%
B.1.351 ( pangolin_lineage ) Prevalence: 1.20%
C.2.1 ( pangolin_lineage ) Prevalence: 0.10%
C.26 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.448 ( pangolin_lineage ) Prevalence: 0.03%
P.1.6 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.70 ( pangolin_lineage ) Prevalence: 0.20%
B.1.1.434 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.254 ( pangolin_lineage ) Prevalence: 0.03%
B.1 ( pangolin_lineage ) Prevalence: 2.40%
B.1.1.484 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
N.9 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.214 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.135 ( pangolin_lineage ) Prevalence: 0.17%
C.36.3 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.298 ( pangolin_lineage ) Prevalence: 0.10%
C.32 ( pangolin_lineage ) Prevalence: 0.03%
C.16 ( pangolin_lineage ) Prevalence: 0.07%
P.1.12 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.312 ( pangolin_lineage ) Prevalence: 0.10%
R.2 ( pangolin_lineage ) Prevalence: 0.03%
Q.8 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.306 ( pangolin_lineage ) Prevalence: 0.07%
C.14 ( pangolin_lineage ) Prevalence: 0.03%
P.1 ( pangolin_lineage ) Prevalence: 3.53%
N.10 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.280 ( pangolin_lineage ) Prevalence: 0.03%
Q.3 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.371 ( pangolin_lineage ) Prevalence: 0.07%
C.36 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.398 ( pangolin_lineage ) Prevalence: 0.03%
C.37 ( pangolin_lineage ) Prevalence: 1.03%
AE.8 ( pangolin_lineage ) Prevalence: 0.07%
AZ.2.1 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.331 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.203 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.317 ( pangolin_lineage ) Prevalence: 0.03%
N.5 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.120 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.241 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.192 ( pangolin_lineage ) Prevalence: 0.03%
AZ.2 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.159 ( pangolin_lineage ) Prevalence: 0.03%
P.1.14 ( pangolin_lineage ) Prevalence: 0.33%
C.11 ( pangolin_lineage ) Prevalence: 0.07%
AZ.5 ( pangolin_lineage ) Prevalence: 0.30%
B.1.1.274 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.47 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.263 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
B.1.1.348 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.46 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.54 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.370 ( pangolin_lineage ) Prevalence: 0.03%
N.7 ( pangolin_lineage ) Prevalence: 0.03%
P.1.10.1 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.389 ( pangolin_lineage ) Prevalence: 0.03%
C.12 ( pangolin_lineage ) Prevalence: 0.03%
P.1.4 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.50 ( pangolin_lineage ) Prevalence: 0.17%
B.1.1.61 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.216 ( pangolin_lineage ) Prevalence: 0.10%
P.1.10 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.27 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.318 ( pangolin_lineage ) Prevalence: 0.37%
B.1.1.33 ( pangolin_lineage ) Prevalence: 0.13%
B.1.1.284 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.437 ( pangolin_lineage ) Prevalence: 0.17%
B.1.1.413 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.433 ( pangolin_lineage ) Prevalence: 0.10%
C.4 ( pangolin_lineage ) Prevalence: 0.03%
N.3 ( pangolin_lineage ) Prevalence: 0.07%
P.1.7 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.397 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.432 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.142 ( pangolin_lineage ) Prevalence: 0.20%
B.1.1.231 ( pangolin_lineage ) Prevalence: 0.10%
C.37.1 ( pangolin_lineage ) Prevalence: 0.03%
P.1.15 ( pangolin_lineage ) Prevalence: 0.67%
B.1.1.404 ( pangolin_lineage ) Prevalence: 0.07%
B.1.1.302 ( pangolin_lineage ) Prevalence: 0.13%
Q.1 ( pangolin_lineage ) Prevalence: 0.10%
C.3 ( pangolin_lineage ) Prevalence: 0.17%
C.1.2 ( pangolin_lineage ) Prevalence: 0.03%
P.1.2 ( pangolin_lineage ) Prevalence: 0.10%
B.1.1.157 ( pangolin_lineage ) Prevalence: 0.03%
P.1.17.1 ( pangolin_lineage ) Prevalence: 0.13%
C.35 ( pangolin_lineage ) Prevalence: 0.17%
B.1.1.10 ( pangolin_lineage ) Prevalence: 0.03%
B.1.1.189 ( pangolin_lineage ) Prevalence: 0.03%

SNP