SNP
SNP: ID00428
SNP (HGVS):
c.8090 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
8090
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Leu2609Phe
Gene
ORF1ab
Amino Acid Change:
Leu - L - leucine
Phe - F - phenylalanine
Position in the gene
2609
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-12
Location : South America - Chile
Strain-ID : hCoV-19ChileAN-ISPCH-12020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- L ( GISAID_clade ) Prevalence: 0.67%
- GK ( GISAID_clade ) Prevalence: 58.57%
- B.52 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.1.1.370 ( pangolin_lineage ) Prevalence: 0.03%