SNP
SNP: ID001517
SNP (HGVS):
c.6525 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
6525
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Thr2087Ile
Gene
ORF1ab
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
2087
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-11
Location : Europe - France
Strain-ID : hCoV-19FranceIDF_PSL_592020
Map:
Lineages and frequencies
variation observed in these lineages:
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GK ( GISAID_clade ) Prevalence: 58.57%
- AY.45 ( pangolin_lineage ) Prevalence: 0.30%
- AY.46 ( pangolin_lineage ) Prevalence: 0.30%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.37 ( pangolin_lineage ) Prevalence: 0.70%
- Q.1 ( pangolin_lineage ) Prevalence: 0.10%