SNP
SNP: ID001865
SNP (HGVS):
c.5884 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
5884
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Tyr1873Tyr
Gene
ORF1ab
Amino Acid Change:
Tyr - Y - tyrosine
Tyr - Y - tyrosine
Position in the gene
1873
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-24
Location : Asia - India
Strain-ID : hCoV-19IndiaHP-2782020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GK ( GISAID_clade ) Prevalence: 58.57%
- AY.3 ( pangolin_lineage ) Prevalence: 1.30%
- B.1.1.389 ( pangolin_lineage ) Prevalence: 0.03%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.1.216 ( pangolin_lineage ) Prevalence: 0.10%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AZ.5 ( pangolin_lineage ) Prevalence: 0.30%