SNP
SNP: ID004654
SNP (HGVS):
c.5812 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
5812
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Asp1849Asp
Gene
ORF1ab
Amino Acid Change:
Asp - D - aspartic_acid
Asp - D - aspartic_acid
Position in the gene
1849
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-03-13
Location : Europe - United Kingdom
Strain-ID : hCoV-19EnglandCAMB-752792020
Map:
Lineages and frequencies
variation observed in these lineages:
- V ( GISAID_clade ) Prevalence: 0.37%
- GK ( GISAID_clade ) Prevalence: 58.57%
- S ( GISAID_clade ) Prevalence: 1.93%
- GRY ( GISAID_clade ) Prevalence: 5.17%
- G ( GISAID_clade ) Prevalence: 6.87%
- GH ( GISAID_clade ) Prevalence: 3.23%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.23 ( pangolin_lineage ) Prevalence: 1.50%
- C.32 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.1 ( pangolin_lineage ) Prevalence: 2.40%
- B.1.429 ( pangolin_lineage ) Prevalence: 0.13%
- B.1.628 ( pangolin_lineage ) Prevalence: 0.20%
- A.2.5.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- AY.25 ( pangolin_lineage ) Prevalence: 2.50%
- B.1.499 ( pangolin_lineage ) Prevalence: 0.20%
- AY.43 ( pangolin_lineage ) Prevalence: 2.60%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%