SNP
SNP: ID002505
SNP (HGVS):
c.3317 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
3317
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro1018Ser
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Ser - S - serine
Position in the gene
1018
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-19
Location : North America - USA
Strain-ID : hCoV-19USAME-HETL-J00962020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.20 ( pangolin_lineage ) Prevalence: 2.63%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%