SNP
SNP: ID00518
SNP (HGVS):
c.3177 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
3177
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro971Leu
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Leu - L - leucine
Position in the gene
971
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-01-28
Location : North America - USA
Strain-ID : hCoV-19USAIL22020
Map:
Lineages and frequencies
variation observed in these lineages:
- S ( GISAID_clade ) Prevalence: 1.93%
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.1.163 ( pangolin_lineage ) Prevalence: 0.03%
- A.3 ( pangolin_lineage ) Prevalence: 0.07%