SNP
SNP: ID001288
SNP (HGVS):
c.3140 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
3140
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro959Ser
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Ser - S - serine
Position in the gene
959
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-12
Location : North America - USA
Strain-ID : hCoV-19USANY-PV094272020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.1.1.274 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.91 ( pangolin_lineage ) Prevalence: 0.13%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- B.1.1.222 ( pangolin_lineage ) Prevalence: 0.07%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%