SNP
SNP: ID001531
SNP (HGVS):
c.29409 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
29409
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
N : p.Thr379Ile
Gene
N
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
379
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-09
Location : Europe - Germany
Strain-ID : hCoV-19GermanyBY-IMB014322020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GH ( GISAID_clade ) Prevalence: 3.23%
- GK ( GISAID_clade ) Prevalence: 58.57%
- AY.39.1 ( pangolin_lineage ) Prevalence: 3.03%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.1.351.5 ( pangolin_lineage ) Prevalence: 0.07%