SNP
SNP: ID001538
SNP (HGVS):
c.2862 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
2862
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Thr866Ile
Gene
ORF1ab
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
866
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-04-02
Location : North America - USA
Strain-ID : hCoV-19USAMI-MDHHS-SC203162020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- C.37 ( pangolin_lineage ) Prevalence: 1.03%