SNP
SNP: ID002471
SNP (HGVS):
c.27689 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
27689
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF7a : p.Pro99Leu
Gene
ORF7a
Amino Acid Change:
Pro - P - proline
Leu - L - leucine
Position in the gene
99
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-18
Location : South America - Peru
Strain-ID : hCoV-19PeruLIM-INS-1582020
Map:
Lineages and frequencies
variation observed in these lineages:
- O ( GISAID_clade ) Prevalence: 1.90%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.4.5 ( pangolin_lineage ) Prevalence: 0.37%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.43 ( pangolin_lineage ) Prevalence: 2.60%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%