SNP
SNP: ID001496
SNP (HGVS):
c.275 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
275
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Leu4Phe
Gene
ORF1ab
Amino Acid Change:
Leu - L - leucine
Phe - F - phenylalanine
Position in the gene
4
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-04-12
Location : North America - Panama
Strain-ID : hCoV-19PanamaGMI-PA3397702020
Map:
Lineages and frequencies
variation observed in these lineages:
- O ( GISAID_clade ) Prevalence: 1.90%
- S ( GISAID_clade ) Prevalence: 1.93%
- A.2.5.3 ( pangolin_lineage ) Prevalence: 0.07%
- A.2.5.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- A.2.4 ( pangolin_lineage ) Prevalence: 0.10%
- A.2.5.2 ( pangolin_lineage ) Prevalence: 0.03%
- A.2.5 ( pangolin_lineage ) Prevalence: 0.57%