SNP
SNP: ID001993
SNP (HGVS):
c.26060 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
26060
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF3a : p.Thr223Ile
Gene
ORF3a
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
223
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-02-11
Location : Europe - Netherlands
Strain-ID : hCoV-19NetherlandsNB-EMC-8562020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- O ( GISAID_clade ) Prevalence: 1.90%
- GK ( GISAID_clade ) Prevalence: 58.57%
- AY.20 ( pangolin_lineage ) Prevalence: 2.63%
- B.1.1.216 ( pangolin_lineage ) Prevalence: 0.10%
- B.1.1.33 ( pangolin_lineage ) Prevalence: 0.13%
- P.1.17.1 ( pangolin_lineage ) Prevalence: 0.13%
- C.37 ( pangolin_lineage ) Prevalence: 1.03%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.1.404 ( pangolin_lineage ) Prevalence: 0.07%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- AY.36 ( pangolin_lineage ) Prevalence: 0.43%