SNP
SNP: ID00380
SNP (HGVS):
c.25844 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
25844
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF3a : p.Thr151Ile
Gene
ORF3a
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
151
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-09
Location : South America - Brazil
Strain-ID : hCoV-19BrazilSP-BT67312020
Map:
Lineages and frequencies
variation observed in these lineages:
- GV ( GISAID_clade ) Prevalence: 1.03%
- GH ( GISAID_clade ) Prevalence: 3.23%
- G ( GISAID_clade ) Prevalence: 6.87%
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GR ( GISAID_clade ) Prevalence: 18.10%
- GK ( GISAID_clade ) Prevalence: 58.57%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.1.177.81 ( pangolin_lineage ) Prevalence: 0.07%
- B.1.351.5 ( pangolin_lineage ) Prevalence: 0.07%
- B.1.527 ( pangolin_lineage ) Prevalence: 0.03%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%
- B.1.351 ( pangolin_lineage ) Prevalence: 1.20%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.1.33 ( pangolin_lineage ) Prevalence: 0.13%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- B.1.618 ( pangolin_lineage ) Prevalence: 0.03%
- P.1.12 ( pangolin_lineage ) Prevalence: 0.10%