SNP
SNP: ID002238
SNP (HGVS):
c.25339 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
25339
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
S : p.Asp1259Asp
Gene
S
Amino Acid Change:
Asp - D - aspartic_acid
Asp - D - aspartic_acid
Position in the gene
1259
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-07
Location : Asia - Taiwan
Strain-ID : hCoV-19TaiwanTSGH-012020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GK ( GISAID_clade ) Prevalence: 58.57%
- O ( GISAID_clade ) Prevalence: 1.90%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.3.1 ( pangolin_lineage ) Prevalence: 0.17%
- AY.3 ( pangolin_lineage ) Prevalence: 1.30%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- AY.4.3 ( pangolin_lineage ) Prevalence: 0.07%