SNP
SNP: ID002008
SNP (HGVS):
c.23929 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
23929
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
S : p.Tyr789Tyr
Gene
S
Amino Acid Change:
Tyr - Y - tyrosine
Tyr - Y - tyrosine
Position in the gene
789
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-28
Location : Europe - Italy
Strain-ID : hCoV-19ItalyLOM-UniMI-L2832020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GK ( GISAID_clade ) Prevalence: 58.57%
- O ( GISAID_clade ) Prevalence: 1.90%
- L ( GISAID_clade ) Prevalence: 0.67%
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.6 ( pangolin_lineage ) Prevalence: 0.40%
- B.1 ( pangolin_lineage ) Prevalence: 2.40%
- B.6.8 ( pangolin_lineage ) Prevalence: 0.10%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- B.6.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.6.2 ( pangolin_lineage ) Prevalence: 0.07%
- B.6.6 ( pangolin_lineage ) Prevalence: 0.03%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%