SNP
SNP: ID002532
SNP (HGVS):
c.20178 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
20178
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Val6638Val
Gene
ORF1ab
Amino Acid Change:
Val - V - valine
Val - V - valine
Position in the gene
6638
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-17
Location : North America - USA
Strain-ID : hCoV-19USANV-NSPHL-3386952020
Map:
Lineages and frequencies
variation observed in these lineages:
- GRY ( GISAID_clade ) Prevalence: 5.17%
- GR ( GISAID_clade ) Prevalence: 18.10%
- GK ( GISAID_clade ) Prevalence: 58.57%
- N.10 ( pangolin_lineage ) Prevalence: 0.03%
- AY.24 ( pangolin_lineage ) Prevalence: 0.87%
- C.37 ( pangolin_lineage ) Prevalence: 1.03%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%