SNP
SNP: ID001209
SNP (HGVS):
c.19884 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
19884
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Tyr6540Tyr
Gene
ORF1ab
Amino Acid Change:
Tyr - Y - tyrosine
Tyr - Y - tyrosine
Position in the gene
6540
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-28
Location : Asia - China
Strain-ID : hCoV-19ShanghaiCH-022020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- G ( GISAID_clade ) Prevalence: 6.87%
- B.1.525 ( pangolin_lineage ) Prevalence: 0.50%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%