SNP
SNP: ID001990
SNP (HGVS):
c.17747 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
17747
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro5828Leu
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Leu - L - leucine
Position in the gene
5828
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-02-21
Location : North America - USA
Strain-ID : hCoV-19USAWA-S842020
Map:
Lineages and frequencies
variation observed in these lineages:
- S ( GISAID_clade ) Prevalence: 1.93%
- GK ( GISAID_clade ) Prevalence: 58.57%
- A.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%