SNP
SNP: ID004502
SNP (HGVS):
c.16049 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
16049
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Thr5262Ile
Gene
ORF1ab
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
5262
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-01-24
Location : Asia - China
Strain-ID : hCoV-19AnhuiSZ0052020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- AY.20 ( pangolin_lineage ) Prevalence: 2.63%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- AY.26 ( pangolin_lineage ) Prevalence: 1.10%
- AY.5 ( pangolin_lineage ) Prevalence: 0.87%