SNP
SNP: ID003558
SNP (HGVS):
c.15848 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
15848
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Thr5195Ile
Gene
ORF1ab
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
5195
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-04-02
Location : South America - Brazil
Strain-ID : hCoV-19BrazilRJ-FIOCRUZ-15952020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- B.1.1.433 ( pangolin_lineage ) Prevalence: 0.10%