SNP
SNP: ID002347
SNP (HGVS):
c.13176 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
13176
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Thr4304Ile
Gene
ORF1ab
Amino Acid Change:
Thr - T - threonine
Ile - I - isoleucine
Position in the gene
4304
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-17
Location : Asia - Japan
Strain-ID : hCoV-19JapanPG-01732020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- G ( GISAID_clade ) Prevalence: 6.87%
- AY.33 ( pangolin_lineage ) Prevalence: 1.03%
- B.1.525 ( pangolin_lineage ) Prevalence: 0.50%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%