SNP
SNP: ID003727
SNP (HGVS):
c.12439 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
12439
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro4058Pro
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Pro - P - proline
Position in the gene
4058
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-03-03
Location : Oceania - Australia
Strain-ID : hCoV-19AustraliaSA02172020
Map:
Lineages and frequencies
variation observed in these lineages:
- GK ( GISAID_clade ) Prevalence: 58.57%
- G ( GISAID_clade ) Prevalence: 6.87%
- GR ( GISAID_clade ) Prevalence: 18.10%
- B.1 ( pangolin_lineage ) Prevalence: 2.40%
- B.1.380 ( pangolin_lineage ) Prevalence: 0.17%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- AY.47 ( pangolin_lineage ) Prevalence: 0.27%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- AY.25 ( pangolin_lineage ) Prevalence: 2.50%
- B.1.1.7 ( pangolin_lineage ) Prevalence: 8.40%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%