SNP
SNP: ID001567
SNP (HGVS):
c.1191 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
1191
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Pro309Leu
Gene
ORF1ab
Amino Acid Change:
Pro - P - proline
Leu - L - leucine
Position in the gene
309
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-03-11
Location : Asia - Japan
Strain-ID : hCoV-19JapanPG-15972020
Map:
Lineages and frequencies
variation observed in these lineages:
- S ( GISAID_clade ) Prevalence: 1.93%
- GH ( GISAID_clade ) Prevalence: 3.23%
- G ( GISAID_clade ) Prevalence: 6.87%
- GR ( GISAID_clade ) Prevalence: 18.10%
- GK ( GISAID_clade ) Prevalence: 58.57%
- B.1.311 ( pangolin_lineage ) Prevalence: 0.03%
- AY.35 ( pangolin_lineage ) Prevalence: 0.13%
- AY.16 ( pangolin_lineage ) Prevalence: 0.27%
- AY.5 ( pangolin_lineage ) Prevalence: 0.87%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- AY.13 ( pangolin_lineage ) Prevalence: 0.10%
- AY.37 ( pangolin_lineage ) Prevalence: 0.70%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.30 ( pangolin_lineage ) Prevalence: 0.47%
- A.25 ( pangolin_lineage ) Prevalence: 0.03%
- AY.15 ( pangolin_lineage ) Prevalence: 0.03%
- AY.14 ( pangolin_lineage ) Prevalence: 0.17%
- AY.11 ( pangolin_lineage ) Prevalence: 0.13%