SNP
SNP: ID001588
SNP (HGVS):
c.11020 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
11020
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Leu3585Leu
Gene
ORF1ab
Amino Acid Change:
Leu - L - leucine
Leu - L - leucine
Position in the gene
3585
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-03-16
Location : Europe - Luxembourg
Strain-ID : hCoV-19LuxembourgLNS86395022020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.24 ( pangolin_lineage ) Prevalence: 0.87%
- B.1.628 ( pangolin_lineage ) Prevalence: 0.20%
- C.37 ( pangolin_lineage ) Prevalence: 1.03%
- AY.30 ( pangolin_lineage ) Prevalence: 0.47%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%