SNP
SNP: ID004103
SNP (HGVS):
c.10615 C > T
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
T - (Thymine)
Position in the genome:
10615
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
ORF1ab : p.Asp3450Asp
Gene
ORF1ab
Amino Acid Change:
Asp - D - aspartic_acid
Asp - D - aspartic_acid
Position in the gene
3450
Position in the gene
Synonymous / Non-Synonymous:
Synonymous
Structural / Non-Structural Protein:
Non-Structural
Predicted effect:
LOW
FIRST KNOW APPEARANCE
Date : 2020-02-27
Location : Europe - France
Strain-ID : hCoV-19FrancePAC-IHUCOVID-00012020
Map:
Lineages and frequencies
variation observed in these lineages:
- GH ( GISAID_clade ) Prevalence: 3.23%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GR ( GISAID_clade ) Prevalence: 18.10%
- AY.39.1 ( pangolin_lineage ) Prevalence: 3.03%
- B.1.351.2 ( pangolin_lineage ) Prevalence: 0.07%
- AY.36 ( pangolin_lineage ) Prevalence: 0.43%
- AY.3 ( pangolin_lineage ) Prevalence: 1.30%
- B.1.351.3 ( pangolin_lineage ) Prevalence: 0.03%
- P.1.6 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%