SNP
SNP: ID001940
SNP (HGVS):
c.28512 C > G
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
G - (Guanine)
Position in the genome:
28512
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
N : p.Pro80Arg
Gene
N
Amino Acid Change:
Pro - P - proline
Arg - R - arginine
Position in the gene
80
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-06-08
Location : Asia - Japan
Strain-ID : hCoV-19JapanIC-00562020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GR ( GISAID_clade ) Prevalence: 18.10%
- P.1.2 ( pangolin_lineage ) Prevalence: 0.10%
- P.1.10.1 ( pangolin_lineage ) Prevalence: 0.07%
- P.1.6 ( pangolin_lineage ) Prevalence: 0.03%
- P.1.12 ( pangolin_lineage ) Prevalence: 0.10%
- B.1.1 ( pangolin_lineage ) Prevalence: 2.77%
- P.1.17.1 ( pangolin_lineage ) Prevalence: 0.13%
- P.1.15 ( pangolin_lineage ) Prevalence: 0.67%
- P.1.14 ( pangolin_lineage ) Prevalence: 0.33%
- P.1.17 ( pangolin_lineage ) Prevalence: 0.30%
- P.1.4 ( pangolin_lineage ) Prevalence: 0.07%
- P.1.7 ( pangolin_lineage ) Prevalence: 0.07%
- P.1.10 ( pangolin_lineage ) Prevalence: 0.03%
- P.1 ( pangolin_lineage ) Prevalence: 3.53%