SNP
SNP: ID00644
SNP (HGVS):
c.21618 C > G
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
G - (Guanine)
Position in the genome:
21618
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
S : p.Thr19Arg
Gene
S
Amino Acid Change:
Thr - T - threonine
Arg - R - arginine
Position in the gene
19
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-09-02
Location : North America - USA
Strain-ID : hCoV-19USANMDOH-20203255882020
Map:
Lineages and frequencies
variation observed in these lineages:
- G ( GISAID_clade ) Prevalence: 6.87%
- GH ( GISAID_clade ) Prevalence: 3.23%
- GK ( GISAID_clade ) Prevalence: 58.57%
- GV ( GISAID_clade ) Prevalence: 1.03%
- O ( GISAID_clade ) Prevalence: 1.90%
- AY.5 ( pangolin_lineage ) Prevalence: 0.87%
- AY.39.1 ( pangolin_lineage ) Prevalence: 3.03%
- AY.5.2 ( pangolin_lineage ) Prevalence: 0.03%
- AY.42 ( pangolin_lineage ) Prevalence: 0.27%
- AY.4.1 ( pangolin_lineage ) Prevalence: 0.03%
- AY.4.5 ( pangolin_lineage ) Prevalence: 0.37%
- AY.45 ( pangolin_lineage ) Prevalence: 0.30%
- AY.37 ( pangolin_lineage ) Prevalence: 0.70%
- AY.12 ( pangolin_lineage ) Prevalence: 0.03%
- AY.40 ( pangolin_lineage ) Prevalence: 0.13%
- B.1.617.2 ( pangolin_lineage ) Prevalence: 27.27%
- AY.32 ( pangolin_lineage ) Prevalence: 0.20%
- AY.2 ( pangolin_lineage ) Prevalence: 0.03%
- AY.7.2 ( pangolin_lineage ) Prevalence: 0.07%
- AY.4.4 ( pangolin_lineage ) Prevalence: 0.07%
- AY.26 ( pangolin_lineage ) Prevalence: 1.10%
- AY.39.1.1 ( pangolin_lineage ) Prevalence: 0.03%
- AY.39 ( pangolin_lineage ) Prevalence: 2.27%
- AY.4.2 ( pangolin_lineage ) Prevalence: 0.10%
- AY.16 ( pangolin_lineage ) Prevalence: 0.27%
- AY.21 ( pangolin_lineage ) Prevalence: 0.03%
- AY.25 ( pangolin_lineage ) Prevalence: 2.50%
- AY.15 ( pangolin_lineage ) Prevalence: 0.03%
- AY.6 ( pangolin_lineage ) Prevalence: 0.13%
- AY.3.1 ( pangolin_lineage ) Prevalence: 0.17%
- AY.33 ( pangolin_lineage ) Prevalence: 1.03%
- AY.44 ( pangolin_lineage ) Prevalence: 0.33%
- AY.7 ( pangolin_lineage ) Prevalence: 0.03%
- AY.30 ( pangolin_lineage ) Prevalence: 0.47%
- AY.1 ( pangolin_lineage ) Prevalence: 0.03%
- AY.34 ( pangolin_lineage ) Prevalence: 0.73%
- AY.23 ( pangolin_lineage ) Prevalence: 1.50%
- AY.29.1 ( pangolin_lineage ) Prevalence: 0.03%
- B.1.524 ( pangolin_lineage ) Prevalence: 0.10%
- AY.24 ( pangolin_lineage ) Prevalence: 0.87%
- AY.29 ( pangolin_lineage ) Prevalence: 0.23%
- AY.46.3 ( pangolin_lineage ) Prevalence: 0.03%
- AY.38 ( pangolin_lineage ) Prevalence: 0.17%
- AY.14 ( pangolin_lineage ) Prevalence: 0.17%
- AY.36 ( pangolin_lineage ) Prevalence: 0.43%
- AY.4 ( pangolin_lineage ) Prevalence: 4.83%
- AY.23.1 ( pangolin_lineage ) Prevalence: 0.13%
- AY.4.3 ( pangolin_lineage ) Prevalence: 0.07%
- AY.20 ( pangolin_lineage ) Prevalence: 2.63%
- AY.27 ( pangolin_lineage ) Prevalence: 0.23%
- AY.3 ( pangolin_lineage ) Prevalence: 1.30%
- AY.22 ( pangolin_lineage ) Prevalence: 0.07%
- AY.43 ( pangolin_lineage ) Prevalence: 2.60%
- AY.10 ( pangolin_lineage ) Prevalence: 0.20%
- AY.46 ( pangolin_lineage ) Prevalence: 0.30%
- AY.28 ( pangolin_lineage ) Prevalence: 0.10%
- AY.35 ( pangolin_lineage ) Prevalence: 0.13%
- AY.46.6 ( pangolin_lineage ) Prevalence: 0.20%
- AY.47 ( pangolin_lineage ) Prevalence: 0.27%
- AY.11 ( pangolin_lineage ) Prevalence: 0.13%
- AY.13 ( pangolin_lineage ) Prevalence: 0.10%