SNP
SNP: ID001894
SNP (HGVS):
c.24138 C > A
Nucleotide in reference genome:
C - (Cytosine)
Nucleotide in target genome:
A - (Adenine)
Position in the genome:
24138
SARS-CoV-2 genes
Annotation
Amino Acid Mutation (HGVS):
S : p.Thr859Asn
Gene
S
Amino Acid Change:
Thr - T - threonine
Asn - N - asparagine
Position in the gene
859
Position in the gene
Synonymous / Non-Synonymous:
Missense
Structural / Non-Structural Protein:
Structural
Predicted effect:
MODERATE
FIRST KNOW APPEARANCE
Date : 2020-09-15
Location : Europe - United Kingdom
Strain-ID : hCoV-19EnglandNOTT-1138892020
Map:
Lineages and frequencies
variation observed in these lineages:
- GR ( GISAID_clade ) Prevalence: 18.10%
- GH ( GISAID_clade ) Prevalence: 3.23%
- GK ( GISAID_clade ) Prevalence: 58.57%
- C.1.2 ( pangolin_lineage ) Prevalence: 0.03%
- AY.46.6 ( pangolin_lineage ) Prevalence: 0.20%
- B.1.626 ( pangolin_lineage ) Prevalence: 0.07%
- C.37 ( pangolin_lineage ) Prevalence: 1.03%
- C.37.1 ( pangolin_lineage ) Prevalence: 0.03%